Publications

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2026

Nextstrain automates real-time phylogenetic analysis of open data for endemic and emerging pathogens
Kimberly R. Andrews, Jennifer Chang, Cornelius Roemer et al.
bioRxiv, 10.64898/2026.03.23.713807 bibtex Fri 17 July 2026

2021

Nextclade: clade assignment, mutation calling and quality control for viral genomes
Ivan Aksamentov, Cornelius Roemer, Emma B. Hodcroft and Richard A. Neher
Journal of Open Source Software, 6 3773. 10.21105/joss.03773 bibtex Mon 15 November 2021