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Archive of blog posts

2023

Waves driven by immune evasive variants: How large and how often? Sun 18 June 2023

2019

How accurate are branch length estimates in RNA virus phylogenies? Thu 31 October 2019

2018

Debating soft vs hard sweeps in RNA viruses is a waste of time Sun 30 December 2018
Mugration models and homoplasy analysis in TreeTime Thu 19 April 2018
How rapidly does influenza spread? Tue 20 March 2018
Does a small transmission bottleneck slow down antigenic evolution? Wed 03 January 2018

2017

How hot are Mitochondria? Mon 29 May 2017
nextstrain wins the OpenSciencePrize! Tue 28 February 2017

2016

Establishment and dynamics of the latent HIV-1 reservoir Thu 01 December 2016
Colistin resistance evolution Mon 17 October 2016
Does HIV evolve during therapy? Wed 18 May 2016
Mutation rates and fitness costs of HIV-1 Sat 26 March 2016
Prediction of antigenic phenotypes of influenza viruses Fri 11 March 2016

2015

Many aspects of intrapatient HIV-1 evolution are predictable Mon 14 December 2015
HI.nextflu.org visualizes antigenic evolution of influenza viruses Tue 06 October 2015
Recombination in HIV-1 and the "book" of genealogical trees Mon 14 September 2015

2014

Now out in eLife: Predicting evolution Tue 11 November 2014
Is evolution predictable? Thu 05 June 2014
Abundant non-neutral variation in the nematode P. pacificus Thu 23 January 2014

2013

Population genetics of rapid adaptation Tue 05 November 2013
Deleterious effects of synonymous mutations in HIV Mon 09 September 2013
Inferring HIV escape rates Wed 07 August 2013
Coalescence in sexual populations under selection Thu 01 August 2013
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