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Sun 14 May 2017Imprint

Fri 21 April 2023Post-doctoral position in phylogenetics and microbial evolution
Tue 27 April 2021Computational Biologist/Bioinformatician (50-100%)
Wed 06 November 2019Scientific Software Developer/Programmer (50-100%)
Tue 22 October 2019Post-Doc position
Fri 20 January 2017Post-Doc position in pathogen genomics

nonlab_publication16

Fri 09 February 2018Global morphogenetic flow is accurately predicted by the spatial distribution of myosin motors
Mon 01 January 2018How pairwise coevolutionary models capture the collective residue variability in proteins
Mon 18 December 2017Genomic basis and evolutionary potential for extreme drought adaptation in Arabidopsis thaliana
Sun 14 May 2017Active tension network model suggests an exotic mechanical state realized in epithelial tissues
Sun 14 May 2017Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Sun 14 May 2017Identifying Transmission Clusters with Cluster Picker and HIV-TRACE.
Thu 09 February 2017On the post-glacial spread of human commensal Arabidopsis thaliana
Sun 01 January 2017De la variabilit\'e des s\'equences à la pr\'ediction structurale et fonctionnelle : mod\'elisation de familles de prot\'eines homologues
Thu 14 July 20161,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana
Sat 14 May 2016A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland.
Sat 14 May 2016Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters.
Sat 14 May 2016Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic.
Fri 01 January 2016Improving landscape inference by integrating heterogeneous data in the inverse Ising problem
Fri 01 January 2016Methods for adaptive optimization of enhanced oil recovery performance under uncertainty
Wed 14 May 2014The contribution of viral genotype to plasma viral set-point in HIV infection.
Tue 14 May 2013Automated analysis of phylogenetic clusters.

Mon 22 January 2018Pipelines with snakemake
Wed 27 December 2017Why are spaced seeds more sensitive?
Fri 22 December 2017Mutating branching processes in deteriorating environments
Fri 22 December 2017Branching processes with time dependent birth and death rates
Fri 22 December 2017Neutral site frequency spectra
Tue 28 November 2017GTR models
Mon 27 November 2017The marginal distribution of the length of a branch
Sun 05 November 2017Generating function of critical branching processes

Sun 18 June 2023Waves driven by immune evasive variants: How large and how often?
Thu 31 October 2019How accurate are branch length estimates in RNA virus phylogenies?
Sun 30 December 2018Debating soft vs hard sweeps in RNA viruses is a waste of time
Thu 19 April 2018Mugration models and homoplasy analysis in TreeTime
Tue 20 March 2018How rapidly does influenza spread?
Wed 03 January 2018Does a small transmission bottleneck slow down antigenic evolution?
Mon 29 May 2017How hot are Mitochondria?
Tue 28 February 2017nextstrain wins the OpenSciencePrize!
Thu 01 December 2016Establishment and dynamics of the latent HIV-1 reservoir
Mon 17 October 2016Colistin resistance evolution
Wed 18 May 2016Does HIV evolve during therapy?
Sat 26 March 2016Mutation rates and fitness costs of HIV-1
Fri 11 March 2016Prediction of antigenic phenotypes of influenza viruses
Mon 14 December 2015Many aspects of intrapatient HIV-1 evolution are predictable
Tue 06 October 2015HI.nextflu.org visualizes antigenic evolution of influenza viruses
Mon 14 September 2015Recombination in HIV-1 and the "book" of genealogical trees
Tue 11 November 2014Now out in eLife: Predicting evolution
Thu 05 June 2014Is evolution predictable?
Thu 23 January 2014Abundant non-neutral variation in the nematode P. pacificus
Tue 05 November 2013Population genetics of rapid adaptation
Mon 09 September 2013Deleterious effects of synonymous mutations in HIV
Wed 07 August 2013Inferring HIV escape rates
Thu 01 August 2013Coalescence in sexual populations under selection

Sat 11 January 2025The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure
Sat 11 January 2025Development of avian influenza A(H5) virus datasets for Nextclade enables rapid and accurate clade assignment
Fri 03 January 2025Quantifying the evolutionary dynamics of structure and content in closely-related E. coli genomes
Mon 25 November 2024The consequences of SARS-CoV-2 within-host persistence
Fri 18 October 2024Eco-evolutionary dynamics of adapting pathogens and host immunity
Thu 11 July 2024Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level
Fri 05 July 2024Lost in the woods: shifting habitats can lead phylogeography astray
Mon 18 March 2024How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort
Thu 04 January 2024Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions
Thu 28 December 2023SARS-CoV-2 infection in immunosuppression evolves sub-lineages which independently accumulate neutralization escape mutations
Wed 20 December 2023Visualizing and quantifying structural diversity around mobile resistance genes
Fri 01 December 2023Evolution and neutralization escape of the SARS-CoV-2 BA.2.86 subvariant
Thu 02 November 2023APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016
Sun 15 October 2023SARS-CoV-2 evolution in the Omicron era
Mon 11 September 2023Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal
Sat 19 August 2023Fitness effects of mutations to SARS-CoV-2 proteins
Mon 05 June 2023LAPIS is a fast web API for massive open virus sequencing data
Tue 25 April 2023Rapid escape of new SARS-CoV-2 Omicron variants from BA.2-directed antibody responses
Mon 17 April 2023PanGraph: scalable bacterial pan-genome graph construction
Mon 10 April 2023Evolution of the SARS-CoV-2 mutational spectrum
Fri 10 February 2023A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike
Thu 15 December 2022Reversions to consensus are positively selected in HIV-1 and bias substitution rate estimates
Sat 10 December 2022Contributions of adaptation and purifying selection to SARS-CoV-2 evolution
Fri 25 November 2022Impact of cross-border-associated cases on the SARS-CoV-2 epidemic in Switzerland during summer 2020 and 2021
Tue 08 November 2022Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data
Thu 01 September 2022Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa
Tue 23 August 2022Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
Fri 19 August 2022TreeKnit: Inferring ancestral reassortment graphs of influenza viruses
Fri 20 May 2022Evolution, geographic spreading, and demographic distribution of Enterovirus D68
Sat 14 May 2022Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2
Fri 04 March 2022CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants
Mon 15 November 2021Nextclade: clade assignment, mutation calling and quality control for viral genomes
Wed 09 June 2021SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
Mon 07 June 2021Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
Tue 01 June 2021Molecular Epidemiology and Evolutionary Trajectory of Emerging Echovirus 30, Europe
Tue 25 May 2021Novel SARS-CoV-2 variants: the pandemics within the pandemic
Fri 14 May 2021Investigate the origins of COVID-19
Fri 07 May 2021Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2
Thu 25 March 2021SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021—Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing
Fri 05 March 2021Limited Predictability of Amino Acid Substitutions in Seasonal Influenza Viruses
Mon 01 February 2021Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020
Thu 07 January 2021Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
Wed 11 November 2020Asynchrony between virus diversity and antibody selection limits influenza virus evolution
Thu 10 September 2020Cryptic transmission of SARS-CoV-2 in Washington state
Wed 02 September 2020Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution
Wed 26 August 2020Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Thu 20 August 2020Efficient inference, potential, and limitations of site-specific substitution models
Wed 06 May 2020Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
Thu 26 March 2020Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States
Thu 19 March 2020COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation
Sat 15 February 2020Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
Wed 12 February 20202019-novel Coronavirus (2019-nCoV): estimating the case fatality rate – a word of caution
Thu 16 January 2020Co-circulation of multiple enterovirus D68 subclades, including a novel B3 cluster, across Europe in a season of expected low prevalence, 2019/20
Wed 04 December 2019Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017–2018 influenza season
Thu 19 September 2019Phylodynamic theory of persistence, extinction and speciation of rapidly adapting pathogens
Fri 28 June 2019A global surveillance system for crop diseases
Mon 15 April 2019Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing
Thu 07 March 2019Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains
Sat 19 January 2019Evaluation of two workflows for whole genome sequencing-based typing of influenza A viruses
Fri 04 January 2019Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform
Wed 31 October 2018Resolving structural diversity of Carbapenemase-producing gram-negative bacteria using single molecule sequencing
Wed 24 October 2018Real-Time Analysis and Visualization of Pathogen Sequence Data
Tue 04 September 2018Efficient estimation of evolutionary rates by covariance aware regression
Tue 28 August 2018Colistin susceptibility test evaluation of multiple-resistance-level Pseudomonas aeruginosa isolates generated in a morbidostat device
Wed 11 July 2018Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales
Sat 26 May 2018Nextstrain: real-time tracking of pathogen evolution
Sun 18 March 2018Incomplete inhibition of HIV infection results in more HIV infected lymph node cells by reducing cell death
Sun 10 December 2017TreeTime: Maximum-likelihood phylodynamic analysis
Mon 30 October 2017Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology
Wed 25 October 2017panX: pan-genome analysis and exploration
Mon 02 October 2017Estimating time of HIV-1 infection from next-generation sequence diversity
Mon 19 June 2017Rapid and consistent evolution of colistin resistance in XDR Pseudomonas aeruginosa during morbidostat culture
Wed 17 May 2017Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering
Thu 02 March 2017In vivo mutation rates and the landscape of fitness costs of HIV-1
Tue 27 December 2016Error rates, PCR recombination, and sampling depth in HIV-1 Whole Genome Deep Sequencing.
Tue 15 November 2016Establishment and stability of the latent HIV-1 DNA reservoir.
Sun 19 June 2016Optimizing culture conditions for free-living stages of the nematode parasite Strongyloides ratti
Tue 15 March 2016HIV Cell-to-Cell Spread Results in Earlier Onset of Viral Gene Expression by Multiple Infections per Cell.
Mon 07 March 2016Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses.
Tue 26 January 2016Revisiting adult neurogenesis and the role of erythropoietin for neuronal and oligodendroglial differentiation in the hippocampus.
Tue 15 December 2015Population genomics of intrapatient HIV-1 evolution.
Fri 26 June 2015nextflu: real-time tracking of seasonal influenza virus evolution in humans.
Sun 15 March 2015Challenges with using primer IDs to improve accuracy of next generation sequencing.
Tue 11 November 2014Predicting evolution from the shape of genealogical trees.
Tue 01 April 2014Characterization of genetic diversity in the nematode Pristionchus pacificus from population-scale resequencing data.
Sat 15 March 2014Genetic diversity in the interference selection limit.
Wed 09 October 2013Genetic Draft, Selective Interference, and Population Genetics of Rapid Adaptation
Mon 09 September 2013Inferring HIV Escape Rates from Multi-Locus Genotype Data.
Tue 03 September 2013Coalescence and genetic diversity in sexual populations under selection.
Wed 28 August 2013Quantifying selection against synonymous mutations in HIV-1 env evolution.
Mon 19 August 2013Quantifying the range of a lipid phosphate signal in vivo.
Wed 16 January 2013Mathematical modeling of escape of HIV from cytotoxic T lymphocyte responses.
Wed 16 January 2013Emergence of clones in sexual populations
Tue 01 January 2013Genealogies of rapidly adapting populations.
Wed 24 October 2012FFPopSim: an efficient forward simulation package for the evolution of large populations.
Mon 14 May 2012Dynamic mutation-selection balance as an evolutionary attractor.
Mon 14 May 2012Estimating the strength of selective sweeps from deep population diversity data.
Thu 17 November 2011Target search on a dynamic DNA molecule.
Thu 10 November 2011Statistical genetics and evolution of quantitative traits
Mon 01 August 2011Genetic draft and quasi-neutrality in large facultatively sexual populations.
Thu 24 February 2011Correlated evolution of nearby residues in Drosophilid proteins.
Mon 01 February 2010Rate of adaptation in large sexual populations.
Fri 29 January 2010Recombination rate and selection strength in HIV intra-patient evolution.
Wed 06 May 2009Blind source separation techniques for the decomposition of multiply labeled fluorescence images.
Thu 09 April 2009Competition between recombination and epistasis can cause a transition from allele to genotype selection.
Mon 14 May 2007Force-induced DNA slippage.
Mon 14 May 2007Optimal flexibility for conformational transitions in macromolecules.
Sun 14 May 2006Kinetic accessibility of buried DNA sites in nucleosomes.
Sun 14 May 2006Intermediate phase in DNA melting.
Sat 14 May 2005DNA as a programmable viscoelastic nanoelement.
Tue 01 June 2004Applying spectral fingerprinting to the analysis of FRET images.
Fri 14 May 2004Dynamics of force-induced DNA slippage.
Thu 01 January 2004Optimizing imaging parameters for the separation of multiple labels in a fluorescence image

Tue 10 January 2017Evolution of bacteria
Tue 10 January 2017HIV evolution
Tue 10 January 2017Molecular epidemiology
Tue 10 January 2017Theory

Thu 19 October 2017PoissonNMF - Example
Thu 19 October 2017PoissonNTF - Triple stain imaged with Leica SP2
Thu 19 October 2017ImageJ plug-ins to optimize imaging parameters for fluorescence microscopy
Thu 19 October 2017PoissonNMF - Documentation
Thu 19 October 2017PoissonNMF - blind source separation of fluorescence microscopy data
Thu 19 October 2017PoissonNTF - documentation
Thu 19 October 2017PoissonNTF - fluorescence microscopy data combining multiple excitations
Tue 04 April 2017PoissonNMF and multispectral imaging

Thu 15 May 2025"Mutation, purifying selection, and adaptive evolution of SARS-CoV-2"
Mon 24 March 2025"Mutation, purifying selection, and adaptive evolution of SARS-CoV-2"
Tue 24 September 2024"Evolution of SARS-CoV-2, immune escape, and the emergence variants of concern"
Thu 23 May 2024"Spread and Immune Escape of Respiratory RNA Viruses"
Fri 03 May 2024"Mutation, purifying selection, and adaptive evolution of SARS-CoV-2"
Thu 25 April 2024"Mutation, purifying selection, and adaptive evolution of SARS-CoV-2"
Mon 08 April 2024"Tracking and predicting the spread and evolution of RNA viruses"
Mon 18 March 2024"Co-evolution of RNA viruses and the human immune system"
Mon 26 February 2024"Real-time analysis and visualization of pathogen spread with Nextstrain"
Fri 10 November 2023"SARS-CoV-2 evolution and interaction with influenza"
Thu 31 August 2023"Adaptation and immune escape of SARS-CoV-2"
Thu 29 June 2023"Adaptation and immune escape of SARS-CoV-2"
Wed 31 May 2023"From pandemic to endemic: the interplay of immunity, viral evolution, and seasonality"
Mon 29 May 2023"Evolution of SARS-CoV-2: fitness landscapes, immune escape, and emergence of variants of concern"
Thu 27 April 2023
Sat 22 April 2023
Fri 31 March 2023Visualizing how pathogens spread and change
Wed 15 March 2023What can we learn from millions of viral genomes.
Tue 14 March 2023Predictability of influenza virus evolution
Fri 09 December 2022Determinants of antigenic evolution in SARS-CoV-2 and Influenza Viruses
Thu 03 November 2022Contributions of adaptation and purifying selection to SARS-CoV-2 evolution
Thu 15 September 2022Moving targets: Genomic epidemiology tools during a pandemic
Fri 15 July 2022Transmission, escape, and resistance: how human pathogens adapt and change
Tue 10 May 2022Reconstructing, tracking, and predicting viral spread and evolution
Mon 09 May 2022Reconstructing, tracking, and predicting viral spread and evolution
Fri 01 April 2022Reconstructing, tracking, and predicting viral spread and evolution
Wed 23 March 2022Reconstructing, tracking, and predicting viral spread and evolution
Tue 28 September 2021Real-time tracking of SARS-CoV-2 using Nextstrain
Wed 22 September 2021Real-time tracking of RNA viruses using Nextstrain
Fri 17 September 2021Adaptation and convergent evolution of SARS-CoV-2 and other human RNA viruses
Mon 13 September 2021Lessons from other viruses: how pandemics start and end
Wed 07 July 2021Tracking and predicting SARS-CoV-2 variants with Nextstrain
Thu 03 June 2021Real-time tracking of RNA viruses using Nextstrain
Thu 08 April 2021Tracking and predicting the evolution of human RNA viruses
Wed 10 February 2021Real-time tracking of SARS-CoV-2 using Nextstrain
Mon 11 January 2021Population genetics of rapid adaptation and influenza virus evolution
Tue 20 October 2020Tracking and predicting the evolution of human RNA viruses
Tue 13 October 2020Real-time tracking of SARS-CoV-2 evolution and spread
Tue 13 October 2020Modeling and predicting RNA virus evolution
Fri 09 October 2020Tracking and predicting viral evolution, from flu to covid-19
Wed 23 September 2020Real-time tracking of SARS-CoV-2 spread and evolution
Thu 10 September 2020Real-time tracking of SARS-CoV-2 spread and evolution
Thu 03 September 2020Real-time tracking of SARS-CoV-2 spread and evolution
Thu 03 September 2020Real-time tracking of SARS-CoV-2 spread and evolution
Thu 16 July 2020Real-time tracking of SARS-CoV-2 spread and evolution
Wed 20 May 2020Evolution and dynamics of SARS-CoV-2
Mon 11 May 2020Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
Thu 23 April 2020Tracking SARS-CoV-2 using real-time phylogenetics with Nextstrain
Tue 21 January 2020Using open data to track and predict infectious disease
Thu 10 October 2019Tracking and predicting influenza virus diversity
Tue 08 October 2019Using open data to track and predict infectious disease
Fri 04 October 2019Within-host evolution of HIV
Thu 11 July 2019Real-time tracking of pathogen evolution and spread
Wed 03 July 2019Repeatability and predictability in microbial evolution
Tue 28 May 2019Population genetics of rapid adaptation and fitness inference from trees
Tue 14 May 2019Real-time tracking of RNA virus evolution and spread
Thu 07 March 2019RNA virus evolution and the predictability of next year's flu
Wed 06 March 2019Tracking and predicting the spread of pathogens and resistance
Thu 07 February 2019Tracking infectious disease and drug resistance using whole genome sequencing
Mon 21 January 2019Establishment and maintenance of the latent HIV-1 DNA reservoir
Mon 05 November 2018Tracking pathogenic bacteria and AMR at the plasmid, genome, and pan-genome level
Thu 25 October 2018Real-time phylogenetic analysis of emerging pathogens
Fri 19 October 2018Real-time phylogenetic analysis of emerging pathogens
Fri 12 October 2018Universality and predictability in RNA virus evolution
Wed 26 September 2018The evolution of untreated HIV and maintenance of the latent reservoir
Wed 11 July 2018The evolutionary dynamics of untreated HIV and the maintenance of the latent reservoir
Tue 12 June 2018Real-time phylodynamics with nextflu and nextstrain
Mon 12 March 2018RNA virus evolution and the predictability of next year's flu
Thu 08 March 2018Real-time analysis and forecasting of influenza virus evolution
Wed 21 February 2018Within-host evolution of HIV and population genetics of rapid adaptation
Wed 14 February 2018Real-time tracking, molecular epidemiology, and data sharing
Tue 19 December 2017The evolutionary dynamics of untreated HIV and the maintenance of the latent reservoir
Thu 09 November 2017Virus evolution and the predictability of next year's flu
Sat 21 October 2017Recent progress in understanding evolutionary dynamics
Thu 12 October 2017Antigenic evolution of seasonal influenza viruses
Mon 09 October 2017Real-time tracking and prediction of RNA virus evolution
Fri 06 October 2017Rapid adaptation and the predictability of next year's flu
Wed 04 October 2017Virus evolution and the predictability of next year's flu
Thu 21 September 2017Virus evolution and the predictability of next year's flu
Fri 01 September 2017The evolutionary dynamics of untreated HIV and the maintenance of the latent reservoir
Mon 31 July 2017Evolution of HIV, immune escape, and latency
Wed 14 June 2017Real-time tracking of seasonal influenza, Ebola, and Zika viruses
Fri 09 June 2017Virus evolution and the predictability of next year's flu
Thu 25 May 2017Estimating the in-vivo fitness landscape of HIV-1
Thu 04 May 2017Virus evolution and the predictability of next year's flu
Wed 03 May 2017Within-host evolution of HIV
Tue 25 April 2017Tracking and predicting evolution and spread of RNA viruses
Mon 03 April 2017Population genetics of rapid adaptation and the predictability of evolution
Wed 29 March 2017Virus evolution and the predictability of next year's flu
Fri 17 March 2017The evolutionary dynamics of untreated HIV and the maintenance of the latent reservoir
Wed 08 March 2017Intra-patient evolution of HIV-1
Tue 28 February 2017Tracking and predicting the evolution RNA viruses
Tue 10 January 2017Evolution of HIV and influenza viruses
Tue 10 January 2017Population genetics of rapid adaptation and the predictability of evolution

Thu 17 June 2021Patterns of early diversity of SARS-CoV-2

Tue 31 July 2018RNA virus evolution and the predictability of next year's flu

talk_internal17

Thu 15 November 2018Tracking and predicting the spread of infectious disease
Mon 22 October 2018Outlook: Surveillance with Nextstrain
Wed 06 June 2018Microbial evolution
Wed 06 June 2018Microbial evolution
Fri 18 May 2018Learning about evolution from pathogen sequence data
Fri 23 March 2018Ist die Evolution von Grippeviren vorhersehbar?
Thu 22 February 2018Evolution of RNA viruses
Mon 19 February 2018Virus evolution and the predictability of next year's flu
Tue 06 February 2018The evolutionary dynamics of untreated HIV and the maintenance of the latent reservoir
Fri 24 November 2017Virus evolution and the predictability of next year's flu
Mon 02 October 2017In-vitro evolution of colistin resistance
Fri 15 September 2017Improving seasonal influenza vaccines by predicting virus evolution
Thu 14 September 2017Tracking and predicting evolution and spread of RNA viruses
Wed 12 July 2017Recent progress in predictive modeling
Tue 20 June 2017Population genetics of rapid adaptation and the predictability of evolution
Thu 04 May 2017Virus evolution and the predictability of next year's flu
Sun 03 March 2013Technical meeting regarding nextstrain in Switzerland

talk_outreach13

Tue 28 March 2023
Tue 26 April 2022How pandemics start and end
Thu 04 June 2020Evolution and spread of SARS-CoV-2
Thu 30 January 2020Ausbruch eines neuartigem Coronavirus in Wuhan
Hintergründe, Ausbreitung, und Modelierung
Stand: 2020-01-30
Tue 17 September 2019Echtzeit-Analyse, Visualisierung, und Vorhersage der Evolution von Grippe-Viren
Wed 27 March 2019Wie gewinnt man gegen Grippe-Viren?
Tue 05 February 2019Steckbrief: Das Virom
Fri 21 September 2018Using open data to track and predict infectious disease
Mon 23 April 2018Ist die Evolution von Grippeviren vorhersehbar?
Fri 23 March 2018Ist die Evolution von Grippeviren vorhersehbar?
Wed 27 September 2017Virus evolution and the predictability of next year's flu
Mon 11 September 2017Data sharing during public health emergencies
Wed 12 April 2017Virus evolution and the predictability of next year's flu

talk_outreach_en1

Fri 31 January 2020Outbreak of Novel Coronavirus in Wuhan
Background, Spread, and Modelling
date: 2020-01-30

talk_outreach_pre1

Wed 29 September 2021Using open data to track and predict infectious disease

Sat 05 June 2021Tracking and interpreting novel SARS-CoV-2 variants
Wed 12 May 2021Tracking and interpreting novel SARS-CoV-2 variants
Tue 27 April 2021Assessing SARS-CoV-2 variants early on
Tue 27 April 2021SIB resource candidate: Nextstrain
Thu 06 June 2019Real-time tracking and visualization of pathogen sequence data
Tue 21 May 2019Incentives and barries to sharing of sequencing data
Wed 06 February 2019Real-time tracking and visualization of pathogen sequence data
Mon 15 October 2018Data sharing and real-time analysis in Influenza Virus surveillance
Sat 02 September 2017Real-time analysis to track and predict pathogen spread

Wed 23 September 2020Molecular epidemiology and phylogenetic analysis
Sun 04 March 2018Real time analysis and visualization of RNA virus evolution

Wed 01 April 2020Tracking SARS-Cov-2 using viral genomes and projecting its spread
Wed 01 April 2020Tracking SARS-Cov-2 using viral genomes and projecting its spread

Wed 06 November 2024PoL I: Quantitative problems, dimensions, and units
Fri 01 November 2024Physics of Life
Wed 23 October 2024Virus evolution and the spread of infectious disease
Mon 15 January 2024Nextstrain workshop at the Wengen Winter School
Wed 15 November 2023Virus evolution and the spread of infectious disease
Fri 03 November 2023PoL I: Quantitative problems, dimensions, and units
Wed 01 November 2023Physics of Life
Thu 14 September 2023SARS-COV-2 workshop
Thu 14 September 2023Nextstrain workshop at Bad Honnef
Thu 01 December 2022Evolution and spread of Influenza, HIV, and SARS-CoV-2
Wed 30 November 2022Virus evolution and the spread of infectious disease
Tue 20 September 2022Physics of Life
Thu 07 April 2022Virus evolution and population genetics
Fri 25 March 2022Installation and data curation
Fri 25 March 2022Augur and Snakemake
Fri 25 March 2022SARS-COV-2 workshop
Fri 25 March 2022SARS-COV-2 workshop solution
Wed 22 December 2021Virus evolution and the spread of infectious disease
Sat 04 December 2021Evolution and spread of Influenza, HIV, and SARS-CoV-2
Fri 24 September 2021Physics of Life
Tue 27 July 2021Nextstrain webinar at Africa CDC
Thu 29 April 2021Virus evolution and population genetics
Wed 16 December 2020Virus evolution and the spread of infectious disease
Fri 04 December 2020Evolution and spread of Influenza, HIV, and SARS-CoV-2
Fri 04 December 2020Evolution of human RNA viruses
Mon 30 November 2020SARS-CoV-2 und COVID19 -- genomische Epidemilogie in Echtzeit
Wed 23 September 2020Introduction to Phylogenetic Analysis
Wed 23 September 2020SARS-CoV-2 phylogenetic analysis
Wed 23 September 2020SARS-CoV-2 phylogenetic analysis
Thu 17 September 2020Physics of Life
Tue 15 September 2020PoL I: Quantitative problems, dimensions, and units
Thu 23 April 2020Virus evolution and population genetics
Wed 11 December 2019Virus evolution and the spread of infectious disease
Tue 08 October 2019Advanced Snakemake
Tue 08 October 2019Augur and Snakemake
Tue 08 October 2019Augur and Snakemake for VCF input
Tue 08 October 2019Colormaps and geographical coordinates
Tue 08 October 2019Community pages
Tue 08 October 2019Parsing meta data from fasta files
Tue 08 October 2019Nextstrain workshop at RIVM
Tue 08 October 2019Optional parameters of the refine command
Mon 16 September 2019Physics of Life I -- 44702-01
Mon 09 September 2019Augur and Snakemake
Mon 09 September 2019Augur and Snakemake for VCF input
Mon 09 September 2019Nextstrain workshop at [BC]2
Mon 09 September 2019The nextstrain toolchain
Mon 09 September 2019Installation and data curation
Mon 09 September 2019Important tips for your own analysis
Mon 26 August 2019Running nextstrain on GISAID downloads
Mon 26 August 2019Nextstrain/WHO workshop in Singapore
Thu 25 April 2019Virus evolution and population genetics
Thu 24 January 2019Augur and Snakemake
Thu 24 January 2019Augur and Snakemake
Thu 24 January 2019Exploring interactive phylogenies with Auspice
Thu 24 January 2019Running augur on bacterial data
Thu 24 January 2019Introduction to Phylogenetic Analysis
Thu 24 January 2019Nextstrain workshop at KRISP, Durban, South Africa
Thu 20 December 2018Information theory and proportional betting
Thu 20 December 2018Microbial evolution and the spread of infectious disease
Thu 13 December 2018Chromatin organization and structure
Wed 12 December 2018Virus evolution and the spread of infectious disease
Fri 07 December 2018Virus evolution and the spread of infectious disease
Thu 06 December 2018Liquid-liquid phase transitions within cells
Thu 06 December 2018Liquid-liquid phase transitions in cell biology
Thu 29 November 2018Kinetic proofreading and percolation
Thu 22 November 2018Reaction rates and the method of dominant balance
Thu 15 November 2018Bistablility, oscillations, and linear stability analysis
Wed 07 November 2018Physics of Life
Thu 01 November 2018Bifurcations, bistability and oscillations
Thu 25 October 2018Bacterial gene regulation and signaling
Thu 18 October 2018Finding binding sites and diffusion limited rates
Thu 11 October 2018Polymers in biology
Thu 04 October 2018Brownian motion and Diffusion
Thu 27 September 2018Solutions: The relevant scales of cellular biophysics
Thu 27 September 2018Brownian motion, diffusion, and Fick's law
Mon 24 September 2018Kinetic Proofreading
Thu 20 September 2018The relevant scales of cellular biophysics
Thu 12 April 2018Virus evolution and population genetics
Tue 10 April 2018Advanced Methods in Computational Sciences
Sun 04 March 2018A glimpse into sequence bioinformatics
Fri 15 December 2017Evolution of HIV
Fri 15 December 2017Applied evolutionary biology: tracking and predicting the spread of disease
Tue 12 December 2017Kinetic proofreading
Tue 05 December 2017Chromatin organization and structure
Tue 28 November 2017Phase transitions in membranes
Tue 21 November 2017Cytoskeleton -- Solutions to problems
Tue 21 November 2017Liquid-liquid phase transitions within cells
Tue 21 November 2017Liquid-liquid phase transitions in cell biology
Tue 14 November 2017Cytoskeleton -- Solutions to problems
Tue 14 November 2017Reaction rates and the method of dominant balance
Tue 07 November 2017Molecular motors
Mon 06 November 2017Biological Oscillators, circadian rhythms and temperature compensation
Mon 06 November 2017Cytoskeleton -- Solutions to problems
Wed 01 November 2017Virus evolution and the spread of infectious disease
Tue 31 October 2017Cytoskeleton -- Solutions to problems
Tue 31 October 2017Biophysical properties of the cytoskeleton
Tue 24 October 2017Diffusion -- Solutions to problems
Tue 24 October 2017Finding binding sites and diffusion limited rates
Thu 19 October 2017Polymers in biology
Tue 17 October 2017Diffusion -- Solutions to problems
Tue 03 October 2017Diffusion -- Solutions to problems
Tue 03 October 2017Brownian motion and Diffusion
Tue 26 September 2017Brownian motion and Diffusion -- Solutions to problems
Tue 26 September 2017Brownian motion and Diffusion
Mon 25 September 2017Kinetic Proofreading
Tue 19 September 2017Solutions: The relevant scales of cellular biophysics
Tue 19 September 2017The relevant scales of cellular biophysics
Tue 19 September 2017Theoretical Biophysics & mathematical methods
Tue 19 September 2017Theoretical Biophysics & mathematical methods
Mon 24 July 2017Eco-Evolutionary dynamics in Microbial Communities
Mon 24 July 2017Eco-Evolutionary dynamics in Microbial Communities
Mon 24 July 2017Eco-Evolutionary dynamics in Microbial Communities -- pan-genomes
Tue 04 April 2017Advanced Methods in Computational Sciences

Fri 25 March 2022Nextstrain workshop at QLife

Mon 03 February 2025Greta Brenna
Fri 01 November 2024Isabel Joia
Fri 12 July 2024Aleksandr Kuznetsov
Fri 12 July 2024Benjamin Otter
Mon 01 April 2024Georg Angehrn
Sun 12 November 2023Luca Sesta
Sun 10 July 2022Anna Parker
Sun 10 July 2022Laura Urbanska
Sat 20 November 2021Cornelius Roemer
Sat 20 November 2021János Winkler
Sat 20 November 2021Marco Molari
Sat 20 November 2021Reto Tschannen
Sun 01 March 2020Ivan Aksamentov
Sun 01 March 2020Valentin Druelle
Tue 01 January 2019Pierre Barrat
Wed 01 August 2018Eric Ulrich
Sun 14 January 2018Emma Hodcroft
Sun 14 January 2018Nicholas Noll
Sun 14 January 2018Sanda Dejanic
Sat 07 January 2017Bianca Regenbogen
Sat 07 January 2017Emmanuel Benard
Sat 07 January 2017Fabio Zanini
Sat 07 January 2017Pavel Sagulenko
Sat 07 January 2017Richard Neher
Sat 07 January 2017Taylor Kessinger
Sat 07 January 2017Vadim Puller
Sat 07 January 2017Wei Ding