Publications

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2025

Synteny and linkage decay in bacteriophage pangenomes
Jemma M. Fendley, Marco Molari, Richard A. Neher and Boris I. Shraiman
bioRxiv, 10.1101/2025.08.12.669904 bibtex Wed 13 August 2025

Automated Bacteriophage Evolution Studies with the Aionostat
Valentin Druelle, Marco Molari, Giacomo Castagnetti, Alexander Harms and Richard A. Neher
bioRxiv, 10.1101/2025.04.16.649189 bibtex Mon 21 April 2025

Quantifying the evolutionary dynamics of structure and content in closely-related E. coli genomes
Marco Molari, Liam P Shaw and Richard A Neher
Molecular Biology and Evolution, msae272. 10.1093/molbev/msae272 bibtex Fri 03 January 2025

2023

PanGraph: scalable bacterial pan-genome graph construction
Nicholas Noll, Marco Molari, Liam Shaw and Richard Neher
Microbial Genomics, in press., 2022.02.24.481757. 10.1101/2022.02.24.481757 bibtex Mon 17 April 2023