Publications

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2020

Efficient inference, potential, and limitations of site-specific substitution models
Vadim Puller, Pavel Sagulenko and Richard A. Neher
Virus Evolution, 10.1093/ve/veaa066 pdf bibtex Thu 20 August 2020

2018

Nextstrain: real-time tracking of pathogen evolution
James Hadfield, Colin Megill, Sidney M. Bell et al.
Bioinformatics, 10.1093/bioinformatics/bty407 pdf bibtex Sat 26 May 2018

2017

TreeTime: Maximum-likelihood phylodynamic analysis
Pavel Sagulenko, Vadim Puller and Richard A. Neher
Virus Evolution, 4 vex042. 10.1093/ve/vex042 pdf bibtex Sun 10 December 2017