Publications

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2020

Efficient inference, potential, and limitations of site-specific substitution models
Vadim Puller, Pavel Sagulenko and Richard A. Neher
Virus Evolution, 10.1093/ve/veaa066 pdf bibtex Thu 20 August 2020

2017

TreeTime: Maximum-likelihood phylodynamic analysis
Pavel Sagulenko, Vadim Puller and Richard A. Neher
Virus Evolution, 4 vex042. 10.1093/ve/vex042 pdf bibtex Sun 10 December 2017

Estimating time of HIV-1 infection from next-generation sequence diversity
Vadim Puller, Richard Neher and Jan Albert
PLOS Computational Biology, 13 e1005775. 10.1371/journal.pcbi.1005775 pdf bibtex Mon 02 October 2017

In vivo mutation rates and the landscape of fitness costs of HIV-1
Fabio Zanini, Vadim Puller, Johanna Brodin, Jan Albert and Richard A. Neher
Virus Evol, 3 10.1093/ve/vex003 pdf bibtex Thu 02 March 2017

2016

Optimizing culture conditions for free-living stages of the nematode parasite Strongyloides ratti
Alex Dulovic, Vadim Puller and Adrian Streit
Exp. Parasitol., 168 25--30. 10.1016/j.exppara.2016.06.005 bibtex Sun 19 June 2016