Publications

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2024

Eco-evolutionary dynamics of adapting pathogens and host immunity
Pierre Barrat-Charlaix and Richard A. Neher
arXiv, 10.48550/arXiv.2402.07252 bibtex Sun 11 February 2024

2022

TreeKnit: Inferring ancestral reassortment graphs of influenza viruses
Pierre Barrat-Charlaix, Timothy G. Vaughan and Richard A. Neher
PLOS Computational Biology, 18 e1010394. 10.1371/journal.pcbi.1010394 bibtex Fri 19 August 2022

2021

Limited Predictability of Amino Acid Substitutions in Seasonal Influenza Viruses
Pierre Barrat-Charlaix, John Huddleston, Trevor Bedford and Richard A Neher
Molecular Biology and Evolution, 10.1093/molbev/msab065 bibtex Fri 05 March 2021

2020

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution
John Huddleston, John R Barnes, Thomas Rowe et al.
eLife, 9 e60067. 10.7554/eLife.60067 bibtex Wed 02 September 2020

2018

How pairwise coevolutionary models capture the collective residue variability in proteins
M. Figliuzzi, Pierre Barrat-Charlaix and M. Weigt
Molecular Biology and Evolution, bibtex Mon 01 January 2018

2017

De la variabilit\'e des s\'equences à la pr\'ediction structurale et fonctionnelle : mod\'elisation de familles de prot\'eines homologues
Pierre Barrat-Charlaix and M. Weigt
Biologie Aujourd'hui, bibtex Sun 01 January 2017

2016

Improving landscape inference by integrating heterogeneous data in the inverse Ising problem
Pierre Barrat-Charlaix, M. Figliuzzi and M. Weigt
Scientific reports, 6 bibtex Fri 01 January 2016

Methods for adaptive optimization of enhanced oil recovery performance under uncertainty
N. Chugunov, T.S. Ramakrishnan and Pierre Barrat-Charlaix
bibtex Fri 01 January 2016