This workshop provides a brief overview of the basics of phylogenetic analysis, the spread and evolution of SARS-CoV-2, different nomenclature systems, and the use of web-tools.
Slides and materials
- Basics of phylogenetic analysis, slides
- Real-time tracking of SARS-CoV-2 spread and evolution
- Exploring interactive phylogenies with Auspice
- Strains, clades, lineages & variants
- Interpreting phylogenies: pitfalls and uncertainty
- Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Links and example data
- nextclade: Clade assignment, sequence Q:, phylogenetic placement
- cov-lineages: Lineage assignment and phylogenetic placement
- Example data small
- Example data large